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Ninth International Symposium on
Mass Spectrometry in the Health & Life Sciences:
Molecular & Cellular Proteomics

Program

This Symposium has Concluded

August: 22 | 23 | 24 | 25 | 26 | 27

Saturday, August 22

Symposium and Mini-Symposium Registration
Olympic Room, 25th floor, Hotel Nikko, 222 Mason Street, San Francisco

3:00pm Registration

Sunday, August 23

Symposium and Mini-Symposium Registration
Nikko Ballroom Foyer

7:30am Registration

Mini-Symposium on The Relative Merits of Orthogonal Energy Deposition Modes for the Promotion of Fragmentation
Nikko Ballroom

Chair: A. L. Burlingame, University of California, San Francisco, California, USA

8:30am MS.1 New Technology for the Large-scale Proteomic Comparison of Human Embryonic Stem Cells, Induced Pluripotent Stem Cells, and Somatic Cells
Joshua J. Coon, University of Wisconsin, Madison, Wisconsin, USA
9:30 MS.2 Electron Capture Dissociation in Radio-Frequency-Free Cell
Douglas F. Barofsky, Oregon State University, Corvallis, Oregon, USA
10:10 Coffee break
10:50 MS.3 Decoding the Histone Code by Quantitative Proteomics
Benjamin A. Garcia, Princeton University, Princeton, New Jersey, USA
11:30 MS.4 Fragment Assignment by Visual Assistance (FAVA) Program for Analysis of Complex High Resolution MSMS Spectra
Shenheng Guan, University of California, San Francisco, California, USA
12:10pm Lunch

Chair: Shenheng Guan, University of California, San Francisco, California, USA

1:40pm MS.5 Use of Electron Transfer Dissociation to Analyze Combinations of Histone Post-Translational Modifications on an LTQ-Orbitrap
Shannon Eliuk, University of California, San Francisco, California, USA
2:20 MS.6 Electron Capture Dissociation for Structural Studies of Integral Membrane Proteins and Their Modifications
Julian P. Whitelegge, University of California, Los Angeles, California, USA
3:00 MS.7 O-GlcNAcylation: The Post-translational Modification that Best Highlights the Value of ETD
Robert Chalkley, University of California, San Francisco, California, USA
3:40 MS.8 The Use of ECD for Proteomics-wide Identification and Quantification of iso-Asp Residues
Roman Zubarev, Karolinska Institute, Stockholm, Sweden

Nikko Ballroom Vestibule

4:00pm Symposium Registration

Monterey & Carmel Rooms

4:00pm Symposium Poster Set-up

Golden Gate Room, 25th floor

6:00pm Opening Reception

Monday, August 24

Nikko Ballroom Vestibule

7:30am Registration

Symposium
Nikko Ballroom

8:15am Introduction

Chair: John Stults, Genentech, Inc., South San Francisco, California, USA

8:30am 1.1 Plenary Lecture
Global Analysis of Small Molecule Interactions with Proteins
Michael Snyder, Stanford University, Stanford, California, USA

Chair: Connie R. Jimenez, VU University Medical Center, Amsterdam, The Netherlands

9:30am 1.2 Statistical Analysis of Quantitative Proteomics Datasets via Normalized Spectral Abundance Factors
Juan Astorga-Wells, Karolinska Institute, Stockholm, Sweden
10:10 Coffee break
10:30 1.3 Two-Dimensional Liquid Chromatography Coupled with ESI-MS for Protein Identification and Quantification
James Langridge, Waters Corporation, Manchester, UK
11:10 1.4 Targeted Proteomic Approaches Provide Insights into Virion Assembly and Chromatin Remodeling During Viral Infection
Ileana M. Cristea, Princeton University, Princeton, New Jersey, USA
11:50 1.5 Confident Assignment of Post-Translational Modifications Using Top-down Mass Spectrometry
Julian P. Whitelegge, University of California, Los Angeles, California, USA
12:30pm Lunch

Chair: Ralph Bradshaw, University of California, San Francisco, California, USA

2:00pm 2.1 Protein Quantification Through Targeted Mass Spectrometry: The Way Out of Biomarker Purgatory?
Steven A. Carr, The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA
2:40 2.2 Proteomics Targeted to Sub-Cellular Compartments and Integration with Genomics for Candidate Biomarker Discovery in Colorectal Cancer
Connie R. Jimenez, VU University Medical Center, Amsterdam, The Netherlands
3:20 2.3 Towards the Discovery of Biomarkers in Cerebrospinal Fluid by Combining Peptide Ligand Library Treatment and Label Free Protein Quantification on a LTQ-Orbitrap
Florence Roux-Dalvai, CNRS - National Center for Scientific Research, Toulouse, France

Symposium Poster Session A
Monterey & Carmel Rooms

Co-Chairs: David Maltby and Shannon Eliuk, University of California, San Francisco, California, USA

4:00pm Poster Session A

Tuesday, August 25

Symposium
Nikko Ballroom

Chair: James A. Wells, University of California, San Francisco, California, USA

8:30am 3.1 Plenary Lecture
Quantitative Analysis of Proteome Localisation and Dynamics
Angus I. Lamond, Wellcome Trust Biocentre, University of Dundee, Scotland, United Kingdom

Chair: Nevan Krogan, University of California, San Francisco, California, USA

9:30am 3.2 Post-Translational Adenosine Monophosphate (AMP) Modification of Proteins
Antonius Koller, Stony Brook University, Stony Brook, New York, USA
10:10 Coffee break
10:30 3.3 Dissecting the Structure of the Human Spliceosome by Looking at its Pieces
Melissa Jurica, University of California, Santa Cruz, California, USA
11:10 3.4 Protein complexes and functional pathways in S. cerevisiae and E. coli
Jack Greenblatt, University of Toronto, Ontario, Canada
11:50 3.5 N-Terminomics: High Confidence, Broad Dynamic Range Coverage Utilizing Novel Polymers for Proteomics Reveals the Functional State of the Proteome
Christopher M. Overall, University of British Columbia, Vancouver, British Columbia, Canada
12:30pm Lunch

Chair: Charles Craik, University of California, San Francisco, California, USA

2:00pm 4.1 Activity-based proteomics: applications for enzyme and inhibitor discovery
Benjamin F. Cravatt III, The Scripps Research Institute, La Jolla, California, USA
2:40 4.2 Global Profiling of Proteolytic Cleavage Sites in Apoptosis
Sami Mahrus, University of California, San Francisco, California, USA
3:20 4.3 N-terminal & ‘Genome Free’ Proteomics; de novo Sequence Analysis by a Combination of LysN Protein Digestion and Electron Transfer Dissociation
Albert Heck, Netherlands Proteomics Center and Utrecht University, Utrecht, The Netherlands

Symposium Poster Session B
Monterey & Carmel Rooms

Co-Chairs: Jonathan Trinidad and Katalin Medzihradszky, University of California, San Francisco, California, USA

4:00pm Poster Session B

Wednesday, August 26

Symposium
Nikko Ballroom

Chair: Jonathan Trinidad, University of California, San Francisco, California, USA

8:30am 5.1 Characterization of the Velos, an Enhanced LTQ Orbitrap, for Proteomics
Jesper Velgaard Olsen, University of Copenhagen, NNF Center for Protein Research, Copenhagen, Denmark
9:10 5.2 Analysis of the Yeast Kinase-Substrate Networks by Quantitative Phosphoproteomics
Bernd Bodenmiller, ETH - Swiss Federal Institute of Technology, Zurich, Switzerland
9:50 5.3 Quantitative Phosphoproteomics to Define Kinase-substrate Relationships in Cell Division
Judit Villén, Harvard Medical School, Boston, Massachusetts, USA
10:30 Coffee break

Chair: John Stults, Genentech, South San Francisco, California, USA

10:50am 5.4 Plenary Lecture
Global Analysis of Cdk1 Substrate Phosphorylation Sites in vivo
David O. Morgan, University of California, San Francisco, California, USA
11:50 Lunch

Chair: Ileana M. Cristea, Princeton University, Princeton, New Jersey, USA

1:20pm 6.1 Characterization and Quantification of Phosphosites in the Proteome of Human Primary T-Lymphocytes
Emilio Gelpi, Instituto de Investigaciones Biomedicas, Barcelona, Spain
2:00 6.2 Analysis of Ubiquitin Chain Editing by Quantitative Mass Spectrometry
Donald S. Kirkpatrick, Genentech, Inc., South San Francisco, California, USA
2:40 6.3 Age Determination in the Adult Human Brain and Body Using Bomb-Carbon
Kirsty L. Spalding, Karolinska Institute, Stockholm, Sweden

Symposium Poster Session C
Monterey & Carmel Rooms

Co-Chairs: Robert Chalkley and Nicholas Hertz, University of California, San Francisco, California, USA

3:20pm Poster Session C

Conference Dinner
Julia Morgan Ballroom

6:00pm Conference Dinner Reception
Julia Morgan Ballroom
7:00 Conference Dinner
Julia Morgan Ballroom

Thursday, August 27

Symposium
Nikko Ballroom

Chair: Emilio Gelpi, Instituto de Investigaciones Biomedicas, Barcelona, Spain

8:30am 7.1 Signaling to Transcription Networks in Nerve Injury Response
Michael Fainzilber, Weizmann Institute of Science, Rehovot, Israel
9:10 7.2 Regulation of Neuronal Protein Levels at Subcellular Sites Distant from the Cell Body
Jeffery L. Twiss, A.I. duPont Hospital for Children, Wilmington, Delaware, USA
9:50 7.3 Organelle Proteomics: Linking Axonal Transport to Nerve Regeneration
Valeria Cavalli, Hope Center for Neurological Disorders, Washington University in St. Louis, Missouri, USA
10:30 Coffee break
11:00 7.4 Quantitative Phosphoproteomics Identifies Sites in K-Cl Co-Transporters that Regulate Cell Volume and Neuronal Excitation
Jesse J. Rinehart, Yale University, New Haven, Connecticut, USA
11:40 Lunch

Chair: Pete Wildes, University of California, San Francisco, California, USA

1:40pm 8.1 Mass Spectrometry as a Detector for Protein Ubquitination
Jill Barber, University of Manchester, Manchester, UK
2:20 8.2 Quantitative Proteomics Analysis of C/EBPα Transcription Factor Complexes in Leukemia
Jarrod A. Marto, Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts, USA
3:00 8.3 Rapid, Near Proteome-wide, Quantitative Analysis of Aneuploid Budding Yeast
Noah Dephoure, Harvard Medical School, Boston, Massachusetts, USA

Chair: A. L. Burlingame, University of California, San Francisco, California, USA

3:40pm 8.4 Plenary Lecture
Advancing Epigenetics Research by Proteomics: Technologies, Applications and Perspectives
Ole N. Jensen, University of Southern Denmark, Odense, Denmark

 

4:40pm Closing remarks
5:00 Adjourn

 


last modified Wed Oct 7 13:01:12 2009 PDT