Program
This Symposium has Concluded
August: 22 | 23 | 24 | 25 | 26 | 27
Saturday, August 22
Symposium and Mini-Symposium Registration
Olympic Room, 25th floor, Hotel Nikko, 222 Mason Street, San Francisco
| 3:00pm | Registration | |
Sunday, August 23
Symposium and Mini-Symposium Registration
Nikko Ballroom Foyer
| 7:30am | Registration | |
Mini-Symposium on The Relative Merits of Orthogonal Energy Deposition Modes for the Promotion of Fragmentation
Nikko Ballroom
Chair: A. L. Burlingame, University of California, San Francisco, California, USA
| 8:30am | MS.1 | New Technology for the Large-scale Proteomic Comparison of Human Embryonic Stem Cells, Induced Pluripotent Stem Cells, and Somatic Cells Joshua J. Coon, University of Wisconsin, Madison, Wisconsin, USA |
| 9:30 | MS.2 | Electron Capture Dissociation in Radio-Frequency-Free Cell Douglas F. Barofsky, Oregon State University, Corvallis, Oregon, USA |
| 10:10 | Coffee break | |
| 10:50 | MS.3 | Decoding the Histone Code by Quantitative Proteomics Benjamin A. Garcia, Princeton University, Princeton, New Jersey, USA |
| 11:30 | MS.4 | Fragment Assignment by Visual Assistance (FAVA) Program for Analysis of Complex High Resolution MSMS Spectra Shenheng Guan, University of California, San Francisco, California, USA |
| 12:10pm | Lunch | |
Chair: Shenheng Guan, University of California, San Francisco, California, USA
| 1:40pm | MS.5 | Use of Electron Transfer Dissociation to Analyze Combinations of Histone Post-Translational Modifications on an LTQ-Orbitrap Shannon Eliuk, University of California, San Francisco, California, USA |
| 2:20 | MS.6 | Electron Capture Dissociation for Structural Studies of Integral Membrane Proteins and Their Modifications Julian P. Whitelegge, University of California, Los Angeles, California, USA |
| 3:00 | MS.7 | O-GlcNAcylation: The Post-translational Modification that Best Highlights the Value of ETD Robert Chalkley, University of California, San Francisco, California, USA |
| 3:40 | MS.8 | The Use of ECD for Proteomics-wide Identification and Quantification of iso-Asp Residues Roman Zubarev, Karolinska Institute, Stockholm, Sweden |
Nikko Ballroom Vestibule
| 4:00pm | Symposium Registration | |
Monterey & Carmel Rooms
| 4:00pm | Symposium Poster Set-up | |
Golden Gate Room, 25th floor
| 6:00pm | Opening Reception | |
Monday, August 24
Nikko Ballroom Vestibule
| 7:30am | Registration | |
Symposium
Nikko Ballroom
| 8:15am | Introduction | |
Chair: John Stults, Genentech, Inc., South San Francisco, California, USA
| 8:30am | 1.1 | Plenary Lecture Global Analysis of Small Molecule Interactions with Proteins Michael Snyder, Stanford University, Stanford, California, USA |
Chair: Connie R. Jimenez, VU University Medical Center, Amsterdam, The Netherlands
| 9:30am | 1.2 | Statistical Analysis of Quantitative Proteomics Datasets via Normalized Spectral Abundance Factors Juan Astorga-Wells, Karolinska Institute, Stockholm, Sweden |
| 10:10 | Coffee break | |
| 10:30 | 1.3 | Two-Dimensional Liquid Chromatography Coupled with ESI-MS for Protein Identification and Quantification James Langridge, Waters Corporation, Manchester, UK |
| 11:10 | 1.4 | Targeted Proteomic Approaches Provide Insights into Virion Assembly and Chromatin Remodeling During Viral Infection Ileana M. Cristea, Princeton University, Princeton, New Jersey, USA |
| 11:50 | 1.5 | Confident Assignment of Post-Translational Modifications Using Top-down Mass Spectrometry Julian P. Whitelegge, University of California, Los Angeles, California, USA |
| 12:30pm | Lunch | |
Chair: Ralph Bradshaw, University of California, San Francisco, California, USA
| 2:00pm | 2.1 | Protein Quantification Through Targeted Mass Spectrometry: The Way Out of Biomarker Purgatory? Steven A. Carr, The Broad Institute of MIT and Harvard, Cambridge, Massachusetts, USA |
| 2:40 | 2.2 | Proteomics Targeted to Sub-Cellular Compartments and Integration with Genomics for Candidate Biomarker Discovery in Colorectal Cancer Connie R. Jimenez, VU University Medical Center, Amsterdam, The Netherlands |
| 3:20 | 2.3 | Towards the Discovery of Biomarkers in Cerebrospinal Fluid by Combining Peptide Ligand Library Treatment and Label Free Protein Quantification on a LTQ-Orbitrap Florence Roux-Dalvai, CNRS - National Center for Scientific Research, Toulouse, France |
Symposium Poster Session A
Monterey & Carmel Rooms
Co-Chairs: David Maltby and Shannon Eliuk, University of California, San Francisco, California, USA
| 4:00pm | Poster Session A | |
Tuesday, August 25
Symposium
Nikko Ballroom
Chair: James A. Wells, University of California, San Francisco, California, USA
| 8:30am | 3.1 | Plenary Lecture Quantitative Analysis of Proteome Localisation and Dynamics Angus I. Lamond, Wellcome Trust Biocentre, University of Dundee, Scotland, United Kingdom |
Chair: Nevan Krogan, University of California, San Francisco, California, USA
| 9:30am | 3.2 | Post-Translational Adenosine Monophosphate (AMP) Modification of Proteins Antonius Koller, Stony Brook University, Stony Brook, New York, USA |
| 10:10 | Coffee break | |
| 10:30 | 3.3 | Dissecting the Structure of the Human Spliceosome by Looking at its Pieces Melissa Jurica, University of California, Santa Cruz, California, USA |
| 11:10 | 3.4 | Protein complexes and functional pathways in S. cerevisiae and E. coli Jack Greenblatt, University of Toronto, Ontario, Canada |
| 11:50 | 3.5 | N-Terminomics: High Confidence, Broad Dynamic Range Coverage Utilizing Novel Polymers for Proteomics Reveals the Functional State of the Proteome Christopher M. Overall, University of British Columbia, Vancouver, British Columbia, Canada |
| 12:30pm | Lunch | |
Chair: Charles Craik, University of California, San Francisco, California, USA
| 2:00pm | 4.1 | Activity-based proteomics: applications for enzyme and inhibitor discovery Benjamin F. Cravatt III, The Scripps Research Institute, La Jolla, California, USA |
| 2:40 | 4.2 | Global Profiling of Proteolytic Cleavage Sites in Apoptosis Sami Mahrus, University of California, San Francisco, California, USA |
| 3:20 | 4.3 | N-terminal & ‘Genome Free’ Proteomics; de novo Sequence Analysis by a Combination of LysN Protein Digestion and Electron Transfer Dissociation Albert Heck, Netherlands Proteomics Center and Utrecht University, Utrecht, The Netherlands |
Symposium Poster Session B
Monterey & Carmel Rooms
Co-Chairs: Jonathan Trinidad and Katalin Medzihradszky, University of California, San Francisco, California, USA
| 4:00pm | Poster Session B | |
Wednesday, August 26
Symposium
Nikko Ballroom
Chair: Jonathan Trinidad, University of California, San Francisco, California, USA
| 8:30am | 5.1 | Characterization of the Velos, an Enhanced LTQ Orbitrap, for Proteomics Jesper Velgaard Olsen, University of Copenhagen, NNF Center for Protein Research, Copenhagen, Denmark |
| 9:10 | 5.2 | Analysis of the Yeast Kinase-Substrate Networks by Quantitative Phosphoproteomics Bernd Bodenmiller, ETH - Swiss Federal Institute of Technology, Zurich, Switzerland |
| 9:50 | 5.3 | Quantitative Phosphoproteomics to Define Kinase-substrate Relationships in Cell Division Judit Villén, Harvard Medical School, Boston, Massachusetts, USA |
| 10:30 | Coffee break | |
Chair: John Stults, Genentech, South San Francisco, California, USA
| 10:50am | 5.4 | Plenary Lecture Global Analysis of Cdk1 Substrate Phosphorylation Sites in vivo David O. Morgan, University of California, San Francisco, California, USA |
| 11:50 | Lunch | |
Chair: Ileana M. Cristea, Princeton University, Princeton, New Jersey, USA
| 1:20pm | 6.1 | Characterization and Quantification of Phosphosites in the Proteome of Human Primary T-Lymphocytes Emilio Gelpi, Instituto de Investigaciones Biomedicas, Barcelona, Spain |
| 2:00 | 6.2 | Analysis of Ubiquitin Chain Editing by Quantitative Mass Spectrometry Donald S. Kirkpatrick, Genentech, Inc., South San Francisco, California, USA |
| 2:40 | 6.3 | Age Determination in the Adult Human Brain and Body Using Bomb-Carbon Kirsty L. Spalding, Karolinska Institute, Stockholm, Sweden |
Symposium Poster Session C
Monterey & Carmel Rooms
Co-Chairs: Robert Chalkley and Nicholas Hertz, University of California, San Francisco, California, USA
| 3:20pm | Poster Session C | |
Conference Dinner
Julia Morgan Ballroom
| 6:00pm | Conference Dinner Reception Julia Morgan Ballroom |
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| 7:00 | Conference Dinner Julia Morgan Ballroom |
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Thursday, August 27
Symposium
Nikko Ballroom
Chair: Emilio Gelpi, Instituto de Investigaciones Biomedicas, Barcelona, Spain
| 8:30am | 7.1 | Signaling to Transcription Networks in Nerve Injury Response Michael Fainzilber, Weizmann Institute of Science, Rehovot, Israel |
| 9:10 | 7.2 | Regulation of Neuronal Protein Levels at Subcellular Sites Distant from the Cell Body Jeffery L. Twiss, A.I. duPont Hospital for Children, Wilmington, Delaware, USA |
| 9:50 | 7.3 | Organelle Proteomics: Linking Axonal Transport to Nerve Regeneration Valeria Cavalli, Hope Center for Neurological Disorders, Washington University in St. Louis, Missouri, USA |
| 10:30 | Coffee break | |
| 11:00 | 7.4 | Quantitative Phosphoproteomics Identifies Sites in K-Cl Co-Transporters that Regulate Cell Volume and Neuronal Excitation Jesse J. Rinehart, Yale University, New Haven, Connecticut, USA |
| 11:40 | Lunch | |
Chair: Pete Wildes, University of California, San Francisco, California, USA
| 1:40pm | 8.1 | Mass Spectrometry as a Detector for Protein Ubquitination Jill Barber, University of Manchester, Manchester, UK |
| 2:20 | 8.2 | Jarrod A. Marto, Dana-Farber Cancer Institute, Harvard Medical School, Boston, Massachusetts, USA |
| 3:00 | 8.3 | Rapid, Near Proteome-wide, Quantitative Analysis of Aneuploid Budding Yeast Noah Dephoure, Harvard Medical School, Boston, Massachusetts, USA |
Chair: A. L. Burlingame, University of California, San Francisco, California, USA
| 3:40pm | 8.4 | Plenary Lecture Advancing Epigenetics Research by Proteomics: Technologies, Applications and Perspectives Ole N. Jensen, University of Southern Denmark, Odense, Denmark |
| 4:40pm | Closing remarks | |
| 5:00 | Adjourn | |
