Program
This Symposium has Concluded
Molecular and Cellular Proteomics
August 21-25, 2005
August: | 20 | 21 | 22 | 23 | 24 | 25 |
Session: | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 |
Poster Listings: | A | B | C |
Plenary Lectures: George R. Stark, Mike Tyers, Mark R. Chance
Saturday, August 20
Location: French Room
| Time | Session # | Topic |
|---|---|---|
| 3:00 PM | Registration |
Sunday, August 21
Location: Grand Ballroom Vestibule
| Time | Session # | Topic |
|---|---|---|
| 7:15 AM | Registration |
Chair: A. L. Burlingame, University of California, San Francisco
Location: Grand Ballroom
| Time | Session # | Topic |
|---|---|---|
| 8:30 AM | MS.1 | Top down mass spectrometry of larger (200 kDa) proteins Fred W. McLafferty, Cornell University, Ithaca, NY |
| 9:10 AM | MS. 2 | Detecting isoAspartic acid residues in proteins Peter O’Connor, Boston University School of Medicine, Boston, MA |
| 9:50 AM | MS.3 | Cracking the histone code: A mass spectrometry based approach
for the determination of histone modifications Michael A. Freitas, The Ohio State University, Columbus, OH |
| 10:30 AM | Coffee Break | |
| 10:50 AM | MS.4 | Top down mass spectrometry for precise characterization of human
proteins Neil Kelleher, University of Illinois, Urbana, IL |
| 11:30 AM | MS.5 | Electron Transfer Dissociation (ETD): Extending reach of mass
spectrometry in peptide and protein analysis John Syka, University of Virginia and Thermo Electron Co., Charlottesville, VA |
| 12:10 PM | Lunch |
Chair: Shenheng Guan, University of California, San Francisco
| Time | Session # | Topic |
|---|---|---|
| 1:40 PM | MS.6 | Enabling technologies for accurate mass measurement for identifying
biomarkers and protein post-translational modifications, and for mapping
contact surfaces in protein complexes Alan G. Marshall, Florida State University, Tallahassee, FL |
| 2:20 PM | MS.7 | Ion-electron reactions for error-free proteomics Roman Zubarev, Uppsala University, Uppsala, Sweden |
| 3:00 PM | Registration Grand Ballroom Vestibule |
|
| 3:00 PM | Poster Set-up Gold & Venetian Rooms |
|
| 6:00 PM | Opening Reception Pavillion Room |
Monday, August 22
Location: Grand Ballroom Vestibule
| Time | Session # | Topic |
|---|---|---|
| 7:30 AM | Registration |
Location: Grand Ballroom
| Time | Session # | Topic |
|---|---|---|
| 8:15 AM | 1 | Introduction A. L. Burlingame, University of California, San Francisco John Stults, Predicant Biosciences, S. San Francisco, CA Ruedi Aebersold, Swiss Federal Institute of Technology, Zurich, Switzerland |
Chair: Ralph Bradshaw, University of California, Irvine
| Time | Session # | Topic |
|---|---|---|
| 8:30 AM | 1.1 |
Unraveling complexity in cytokine-dependent signaling. How can
mass spectrometry help? George R. Stark, Case Western Reserve University, Cleveland, OH |
Chair: Jeffery Kowalak, National Institutes of Health
| Time | Session # | Topic |
|---|---|---|
| 9:30 AM | 1.2 | Bio-orthogonal affinity purification of direct kinase substrates Jasmina Allen, University of California, San Francisco |
| 10:10 AM | Coffee Break | |
| 10:30 AM | 1.3 | Cell cycle proteomics using quantitative mass spectrometry Darryl J. Pappin, Applied Biosystems, Framingham, MA |
| 11:10 AM | 1.4 | Epithelial-mesenchymal transition regulates NSCLC cell sensitivity
to EGF receptor inhibition: applications of quantitative LC-MS/MS
profiling to the dissection of EGFR signaling networks John D. Haley, OSI Pharmaceuticals, Farmingdale, NY |
| 11:50 AM | 1.5 | Analysis and quantification of protein and phosphorylation expression
at the synapse Jonathan Trinidad, University of California, San Francisco |
| 12:30 PM | Lunch |
Chair: Catherine Costello, Boston University, Cambridge, MA
| Time | Session # | Topic |
|---|---|---|
| 2:00 PM | 2.1 | Novel lectin based enrichment of O-GlcNAc peptides: application
to O-GlcNAc proteomics of post-synaptic density fraction from mouse
brain Keith Vosseller, Drexel University College of Medicine, Philadelphia, PA |
| 2:40 PM | 2.2 | Chemical approaches to understanding protein glycosylation in
the brain Linda Hsieh-Wilson, California Institute of Technology, Pasadena, CA |
| 3:20 PM | 2.3 | MS imaging in clinical proteomics Denis Hochstrasser, University of Geneva, Switzerland |
Co-Chairs: Katalin Medzihradszky, University of California, San Francisco
David Maltby, University of California, San Francisco
4:00 PM
Location: Gold & Venetian Rooms
Tuesday, August 23
Chair: Kenneth Standing, University of Manitoba
Location: Grand Ballroom
| Time | Session # | Topic |
|---|---|---|
| 8:30 AM | 3.1 | Desoprtion electrospray ionization (DESI) R. Graham Cooks, Purdue University, West Lafayette, IN |
| 9:10 AM | 3.2 | Bio-ion/Ion reactions and their application to protein mixture
analysis Scott McLuckey, Purdue University, West Lafayette, IN |
| 9:50 AM | 3.3 | Methodology advances in ease of use in protein ID and expression
analysis Sean Seymour, Applied Biosystems, Foster City, CA |
| 10:30 AM | Coffee Break |
Chair: Scott Patterson, Amgen, Inc.
| Time | Session # | Topic |
|---|---|---|
| 10:50 AM | 3.4 | Application of quantitative phosphoproteomics in drug discovery
research Karen Wang, Novartis Institutes for BioMedical Research, Cambridge, MA |
| 11:30 AM | 3.5 | Quantitative analysis of cyclin B ubiquitination catalyzed by
the anaphase-promoting complex Donald Kirkpatrick, Harvard Medical School, Boston, MA |
| 12:10 PM | Lunch |
Chair: A. L. Burlingame, University of California, San Francisco
| Time | Session # | Topic |
|---|---|---|
| 2:00 PM | 4.1 | New mass spectrometry technology and applications in the study
of cell migration, the histone code, and cancer vaccine development Donald Hunt, University of Virginia, Charlottesville, VA |
| 2:40 PM | 4.2 | Harnessing the human proteome Joshua LaBaer, Harvard Institute of Proteomics, Cambridge, MA |
| 3:20 PM | 4.3 | Reading and writing an epigenetic mark for positive regulation
of gene expression Joanna Wysocka, The Rockefeller University, New York, NY |
Juan Oses, University of California, San Francisco
Robert Chalkley, University of California, San Francisco
4:00 PM
Location: Gold & Venetian Rooms
Wednesday, August 24
Chair: Jan Sjövall, Karolinska Institute, Stockholm, Sweden
Location: Grand Ballroom
| Time | Session # | Topic |
|---|---|---|
| 8:30 AM | 5.1 | Protein interaction networks for the PP2A-type phosphatases,
and the role of the PP4 module in DNA damage Anne-Claude Gingras, Institute for Systems Biology, Seattle, WA |
| 9:10 AM | 5.2 | Histone modifications — The regulation of chromatin templated
processes Barbara Panning, University of California, San Francisco |
| 9:50 AM | 5.3 | Posttranscriptionally regulated proteomic signalling complexes
in injured nerve axoplasm Michael Fainzilber, Weizmann Institute of Science, Rehovot, Israel |
| 10:30 AM | Coffee Break |
Chair: Ruedi Aebersold, Swiss Federal Institute of Technology, Zurich, Switzerland
| Time | Session # | Topic |
|---|---|---|
| 10:50 AM | 5.4 |
Navigating biological networks Michael Tyers, Mount Sinai Hospital, Toronto, Canada |
| 11:50 AM | Lunch |
Chair: Catherine Fenselau, University of Maryland, Baltimore, MD
| Time | Session # | Topic |
|---|---|---|
| 1:20 PM | 6.1 | Taking advantage of small noncoding RNA pathways in the mouse Michael T. McManus, University of California, San Francisco |
| 2:00 PM | 6.2 | Transcriptional regulatory complexes: A proteomic approach Joan Conaway, Stowers Institute of Medical Research, Kansas City, MO |
Chairs: Jonathan Trinidad, University of California, San Francisco, CA
Frank Li, University of California, San Francisco
2:40 PM
Location: Gold & Venetian Rooms
Reception
6:30 PM
Location: Fountain/Crystal Rooms
Conference Dinner
7:00 PM
Location: Crown Room
Thursday, August 25
Chair: Anne Claude Gingras, Institute for Systems Biology, Seattle, WA
Location: Grand Ballroom
| Time | Session # | Topic |
|---|---|---|
| 8:30 AM | 7.1 | Biological function in genetic networks Roy Kishony, Bauer Center for Genomics Research, Harvard University, Cambridge, MA |
| 9:10 AM | 7.2 | Quantitative mass spectrometry of peroxisomes reveals interplay
with other subcellular structures John Aitchison, Institute for Systems Biology, Seattle, WA |
| 9:50 AM | 7.3 | Protein complexes and functional pathways involved in transcriptional
regulation and chromatin function Nevan Krogan, University of Toronto, Canada |
| 10:30 AM | Coffee Break |
Chair: Michael Fainzilber, Weizmann Institute of Science, Rehovot, Israel
| Time | Session # | Topic |
|---|---|---|
| 10:50 AM | 7.4 | Analysis of leaf proteome after UV-B irradiation in maize lines
differing in sensitivity Virginia Walbot, Stanford University, Stanford, CA |
| 11:30 AM | 7.5 | Pharmacodmynamic biomarkers: Evaluation of Alzheimer’s
disease treatments Gregory Opiteck, Caprion Pharmaceuticals, Montreal, Canada |
| 12:10 AM | Lunch |
Chair: John Stults, Predicant Biosciences, S. San Francisco, CA
| Time | Session # | Topic |
|---|---|---|
| 1:40 PM | 8.1 | Tumor-specific serum peptidome patterns Paul Tempst, Memorial Sloan-Kettering Cancer Center, New York, NY |
| 2:20 PM | 8.2 | Statistical analysis of proteomic spectra Keith Baggerly, MD Anderson Cancer Center, Houston, TX |
| 3:00 PM | 8.3 | Scanning the glyco-proteome in search of new disease markers Julian Watts, Institute for Systems Biology, Seattle, WA |
Chair A. L. Burlingame, University of California, San Francisco
| Time | Session # | Topic |
|---|---|---|
| 3:40 PM | 8.4 |
Structural proteomics of macromolecular assemblies using oxidative
footprinting and mass spectrometry Mark Chance, Albert Einstein Center for Synchrotron Biosciences, Bronx, NY |
| 4:40 PM | Closing Remarks | |
| 5:00 PM | Adjourn |
